NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066795_10003765

Scaffold Ga0066795_10003765


Overview

Basic Information
Taxon OID3300005938 Open in IMG/M
Scaffold IDGa0066795_10003765 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3816
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040820Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0066795_100037655F040820N/AVYPETGLVLLTLHDGTWAASASVGSDVVAVIVSEDGKTAYLADSAPGDVYAVSLPGLQVAWKQHVGGAPFGLLLDHERLFVSLFSGASVVELDPLSGTKLATDPVPAGPAAMTVDAGGHVVVAGTRGQLTVIGGGQLAAGNGFGVAEAGGLLWSADYERAELVPAGDDHRVGLPLPVFPFWLAPGAGTSLLVAAEGGTEDTDPGGVFSFDTMTGSFTTLATPKDPDQVLFSGSTIFVAAHGDRDVLAIKAGMTNVWAPGAAAVALASDPALGYLVVAVNAHE*

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